MolNFT v1 · #136943 · protein
BG505 SOSIP.664 trimer in complex with broadly neutralizing HIV antibody 3BNC117
5V8M: “BG505 SOSIP.664 trimer in complex with broadly neutralizing HIV antibody 3BNC117”. Electron microscopy, 3 ligands (NAG, MAN, BMA). MolNFT v1 #136943 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5V8M
- Type
- protein
- Length
- 2,376 residues
- Chains
- 12
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q2N0S6
- Ligands
- NAG, MAN, BMA
Structure
electron microscopy · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, F, G | — | protein | 444 | — | Q2N0S6 |
| B, I, J | — | protein | 129 | — | Q2N0S6 |
| H, R, S | — | protein | 121 | — | — |
| L, T, U | — | protein | 98 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 99 copies · chains A, B, H, L, F, I, R, G, T, J, S, U
- MAN · alpha-D-mannopyranose · sugar · 39 copies · chains L, T, U
- BMA · beta-D-mannopyranose · sugar · 15 copies · chains A, L, F, T, G, U
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5V8M · BG505 SOSIP.664 trimer in complex with broadly neutralizing HIV antibody 3BNC117 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2N0S6
- Elsewhere: RCSB PDB 5V8M · PDBe 5V8M · UniProt Q2N0S6
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