MolNFT v1 · #136909 · protein
Crystal structure at 3.7 a resolution of glycosylated HIV-1 clade a BG505 SOSIP.664 prefusion env trimer with four glycans (N197, N276, N362, and N462) removed in complex with neutralizing antibodies 3H+109L and 35O22.
5V7J: “Crystal structure at 3.7 a resolution of glycosylated HIV-1 clade a BG505 SOSIP.664 prefusion env trimer with…”. X-ray diffraction, 3 ligands (MAN, NAG, BMA). MolNFT v1 #136909 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 5V7J
- Type
- protein
- Length
- 1,495 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q2N0S6
- Ligands
- MAN, NAG, BMA
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| G | — | protein | 452 | — | Q2N0S6 |
| B | — | protein | 148 | — | Q2N0S6 |
| L | — | protein | 211 | — | — |
| H | — | protein | 231 | — | — |
| D | — | protein | 240 | — | — |
| E | — | protein | 213 | — | — |
Ligands and binding sites
- MAN · alpha-D-mannopyranose · sugar · 39 copies · chains D, E, L, G, H
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 29 copies · chains G, B, D, L, H, E
- BMA · beta-D-mannopyranose · sugar · 11 copies · chains D, E, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5V7J · Crystal Structure at 3.7 A Resolution of Glycosylated HIV-1 Clade A BG505 SOSIP.664… · the same entry in another collection · chain G against G, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2N0S6
- Elsewhere: RCSB PDB 5V7J · PDBe 5V7J · UniProt Q2N0S6
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