MolNFT v1 · #136887 · protein
The plexin D1 intracellular region in complex with GIPC1
5V6T: “The plexin D1 intracellular region in complex with GIPC1”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #136887 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5V6T
- Type
- protein
- Length
- 677 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q3UH93, Q9Z0G0
- Ligands
- SO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 516 | — | Q3UH93 |
| B | — | protein | 161 | — | Q9Z0G0 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 7 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5V6T · The Plexin D1 intracellular region in complex with GIPC1 · the same entry in another collection · chain A against A, TM-score 1.00
- Q3UH93 · AlphaFold monomer V2.0 prediction for plexin-D1 (Q3UH93) · a predicted model of the same protein · chain A against A, TM-score 0.97
- Q9Z0G0 · AlphaFold monomer V2.0 prediction for PDZ domain-containing protein GIPC1 (Q9Z0G0) · a predicted model of the same protein · chain B against A, TM-score 0.59
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3UH93
- Every structure of UniProt Q9Z0G0
- Elsewhere: RCSB PDB 5V6T · PDBe 5V6T · UniProt Q3UH93 · UniProt Q9Z0G0
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