MolNFT v1 · #136673 · protein + DNA
Crystal structure of human exonuclease 1 EXO1 (wt) in complex with 5' flap DNA (F5I)
5V0E: “Crystal structure of human exonuclease 1 EXO1 (wt) in complex with 5' flap DNA (F5I)”. X-ray diffraction, 1 ligand (NA). MolNFT v1 #136673 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5V0E
- Type
- protein + DNA
- Length
- 372 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9UQ84
- Ligands
- NA
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| Z | — | protein | 348 | — | Q9UQ84 |
| A | — | dna | 11 | — | — |
| B | — | dna | 13 | — | — |
Ligands and binding sites
- NA · Sodium ion · metal · chains Z, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5V0E · Crystal structure of human exonuclease 1 Exo1 (WT) in complex with 5' flap DNA (f5I) · the same entry in another collection · chain Z against Z, TM-score 1.00
- Q9UQ84 · AlphaFold monomer V2.0 prediction for exonuclease 1 (Q9UQ84) · a predicted model of the same protein · chain Z against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UQ84
- Elsewhere: RCSB PDB 5V0E · PDBe 5V0E · UniProt Q9UQ84
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