MolNFT v1 · #136577 · protein
Crystal structure of macrolide 2'-phosphotransferase mphh from brachybacterium faecium in complex with GDP
5UXC · Predicted aminoglycoside phosphotransferase: “Crystal structure of macrolide 2'-phosphotransferase mphh from brachybacterium faecium in complex with GDP”. X-ray diffraction, 6 ligands (ZIT, GDP, MG), 1 pocket (best druggability…
- PDB
- 5UXC
- Type
- protein
- Length
- 296 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Predicted aminoglycoside phosphotransferase
- UniProt
- C7MEP1
- Ligands
- ZIT, GDP, MG, SO4, CL, PO4
- Pockets
- 1 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Predicted aminoglycoside phosphotransferase | protein | 296 | 49% helix, 18% strand | C7MEP1 |
Ligands and binding sites
- ZIT · Azithromycin · ligand · 2 copies · chains A
- GDP · Guanosine-5'-diphosphate · ligand · chains A
- MG · Magnesium ion · metal · chains A
- SO4 · Sulfate ion · ion · 3 copies · chains A
- CL · Chloride ion · ion · 2 copies · chains A
- PO4 · Phosphate ion · ion · chains A
- PGE · Triethylene glycol · additive · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 821 | 0.73 | 0.78 | 60 | MG, GDP, PO4, CL, PGE, GOL |
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 5UXC · Crystal structure of macrolide 2'-phosphotransferase MphH from Brachybacterium faecium in… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C7MEP1
- Elsewhere: RCSB PDB 5UXC · PDBe 5UXC · UniProt C7MEP1
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