MolNFT v1 · #136450 · protein
Crystal structure of a stabilized ds-SOSIP.6MUT BG505 GP140 HIV-1 env trimer, containing mutations I201C-P433C (ds), L154M, Y177W, N300M, N302M, T320L, I420M in complex with human antibodies PGT122 and 35O22 at 4.3 a
5UTF: “Crystal structure of a stabilized ds-SOSIP.6MUT BG505 GP140 HIV-1 env trimer, containing mutations…”. X-ray diffraction, 3 ligands (NAG, MAN, BMA). MolNFT v1 #136450 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5UTF
- Type
- protein
- Length
- 1,453 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q2N0S6
- Ligands
- NAG, MAN, BMA
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| G | — | protein | 439 | — | Q2N0S6 |
| B | — | protein | 123 | — | Q2N0S6 |
| L | — | protein | 208 | — | — |
| H | — | protein | 228 | — | — |
| D | — | protein | 242 | — | — |
| E | — | protein | 213 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 35 copies · chains G, B, D, L, H, E
- MAN · alpha-D-mannopyranose · sugar · 19 copies · chains D, E, G, L, H
- BMA · beta-D-mannopyranose · sugar · 5 copies · chains D, E, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5UTF · Crystal Structure of a Stabilized DS-SOSIP.6mut BG505 gp140 HIV-1 Env Trimer, Containing… · the same entry in another collection · chain G against G, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2N0S6
- Elsewhere: RCSB PDB 5UTF · PDBe 5UTF · UniProt Q2N0S6
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