MolNFT v1 · #136247 · protein
Crystal structure of GLUN1/GLUN2B delta-atd NMDA receptor
5UN1: “Crystal structure of GLUN1/GLUN2B delta-atd NMDA receptor”. X-ray diffraction, 4 ligands (BMK, Y01, NAG). MolNFT v1 #136247 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5UN1
- Type
- protein
- Length
- 3,301 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- C0KD15, A7XY94
- Ligands
- BMK, Y01, NAG, MG
Structure
x-ray diffraction · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| G | — | protein | 427 | — | C0KD15 |
| A | — | protein | 417 | — | C0KD15 |
| B | — | protein | 398 | — | A7XY94 |
| H | — | protein | 410 | — | A7XY94 |
| E | — | protein | 412 | — | C0KD15 |
| F | — | protein | 416 | — | A7XY94 |
| C | — | protein | 415 | — | C0KD15 |
| D | — | protein | 406 | — | A7XY94 |
Ligands and binding sites
- BMK · (5S,10R)-5-methyl-10,11-dihydro-5H-5,10-epiminodibenzo[a,d][7]annulene · ligand · 2 copies · chains G, H, E, F, A, B, C, D
- Y01 · Cholesterol hemisuccinate · ligand · chains A, E
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 6 copies · chains G, H, B, F, C, D
- MG · Magnesium ion · metal
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5UN1 · Crystal structure of GluN1/GluN2B delta-ATD NMDA receptor · the same entry in another collection · chain C against C, TM-score 1.00
- A7XY94 · AlphaFold monomer V2.0 prediction for glutamate receptor ionotropic, NMDA 2B (A7XY94) · a predicted model of the same protein · chain B against A, TM-score 0.76
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C0KD15
- Every structure of UniProt A7XY94
- Elsewhere: RCSB PDB 5UN1 · PDBe 5UN1 · UniProt C0KD15 · UniProt A7XY94
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