MolNFT v1 · #136076 · protein
Crystal structure of an oxidoreductase from agrobacterium radiobacter in complex with NAD+, D-apionate and magnesium
5UHZ: “Crystal structure of an oxidoreductase from agrobacterium radiobacter in complex with NAD+, D-apionate and…”. X-ray diffraction, 3 ligands (NAD, 89Y, MG). MolNFT v1 #136076 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5UHZ
- Type
- protein
- Length
- 684 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- B9JK80
- Ligands
- NAD, 89Y, MG
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 342 | — | B9JK80 |
Ligands and binding sites
- NAD · Nicotinamide-adenine-dinucleotide · ligand · 2 copies · chains A, B
- 89Y · (3R,4R)-3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-one · ligand · 2 copies · chains A, B
- MG · Magnesium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5UHZ · Crystal Structure of an Oxidoreductase from Agrobacterium radiobacter in Complex with… · the same entry in another collection · chain A against A, TM-score 1.00
- B9JK80 · AlphaFold monomer V2.0 prediction for D-apiose dehydrogenase (B9JK80) · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B9JK80
- Elsewhere: RCSB PDB 5UHZ · PDBe 5UHZ · UniProt B9JK80
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