MolNFT v1 · #135991 · protein
Crystal structure of variable lymphocyte receptor (vlr) RBC36 with FUCOSE(ALPHA-1-2)LACTOSE bound
5UFF: “Crystal structure of variable lymphocyte receptor (vlr) RBC36 with FUCOSE(ALPHA-1-2)LACTOSE bound”. X-ray diffraction, 3 ligands (BGC, GAL, FUC), 1 pocket (best druggability 0.34). MolNFT v1 #135991 on GenesisL1: 3D structure…
- PDB
- 5UFF
- Type
- protein
- Length
- 216 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RBC36
- Ligands
- BGC, GAL, FUC
- Pockets
- 1 · best druggability 0.34
Structure
x-ray diffraction · 1 distinct chain · 8% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RBC36 | protein | 216 | 8% helix, 17% strand | — |
Ligands and binding sites
- BGC · beta-D-glucopyranose · sugar · chains A
- GAL · beta-D-galactopyranose · sugar · chains A
- FUC · alpha-L-fucopyranose · sugar · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 80 | 0.34 | 0.75 | 17 | GAL |
Modifications
Observed in the structure: 5 disulfide (disulfide).
Compared structures
- 5UFF · Crystal Structure of Variable Lymphocyte Receptor (VLR) RBC36 with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5UFF · PDBe 5UFF
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