MolNFT v1 · #135909 · protein
Class II fructose-1,6-bisphosphate aldolase H180Q variant of helicobacter pylori with fbp
5UD3: “Class II fructose-1,6-bisphosphate aldolase H180Q variant of helicobacter pylori with fbp”. X-ray diffraction, 3 ligands (P6F, ZN, NA). MolNFT v1 #135909 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5UD3
- Type
- protein
- Length
- 586 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P56109
- Ligands
- P6F, ZN, NA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 293 | — | P56109 |
Ligands and binding sites
- P6F · 1,6-di-O-phosphono-D-fructose · ligand · 2 copies · chains A, B
- ZN · Zinc ion · metal · 4 copies · chains A, B
- NA · Sodium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5UD3 · Class II fructose-1,6-bisphosphate aldolase H180Q variant of Helicobacter pylori with FBP · the same entry in another collection · chain A against A, TM-score 1.00
- P56109 · AlphaFold monomer V2.0 prediction for fructose-bisphosphate aldolase (P56109) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P56109
- Elsewhere: RCSB PDB 5UD3 · PDBe 5UD3 · UniProt P56109
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