MolNFT v1 · #135901 · protein
Crystal structure of a ribosome biogenesis GTP-binding protein (ysxc) from neisseria gonorrhoeae with bound GDP
5UCV: “Crystal structure of a ribosome biogenesis GTP-binding protein (ysxc) from neisseria gonorrhoeae with bound…”. X-ray diffraction, 3 ligands (GDP, CL, PO4). MolNFT v1 #135901 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5UCV
- Type
- protein
- Length
- 373 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- B4RQ29
- Ligands
- GDP, CL, PO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 187 | — | B4RQ29 |
| B | — | protein | 186 | — | B4RQ29 |
Ligands and binding sites
- GDP · Guanosine-5'-diphosphate · ligand · chains A
- CL · Chloride ion · ion · chains A, B
- PO4 · Phosphate ion · ion · chains A
- ACT · Acetate ion · additive · 2 copies · chains A, B
- GOL · Glycerol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5UCV · Crystal Structure of a Ribosome Biogenesis GTP-binding protein (YsxC) from Neisseria… · the same entry in another collection · chain A against A, TM-score 1.00
- B4RQ29 · AlphaFold monomer V2.0 prediction for probable GTP-binding protein engb (B4RQ29) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B4RQ29
- Elsewhere: RCSB PDB 5UCV · PDBe 5UCV · UniProt B4RQ29
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