MolNFT v1 · #135735 · protein
Crystal structure of a fructose-bisphosphate aldolase, class II, calvin cycle subtype from acinetobacter baumannii
5U7S · Fructose-1,6-bisphosphate aldolase: “Crystal structure of a fructose-bisphosphate aldolase, class II, calvin cycle subtype from acinetobacter…”. X-ray diffraction, 1 ligand (NA), 2 pockets (best druggability 0.62). MolNFT v1 #135735…
- PDB
- 5U7S
- Type
- protein
- Length
- 653 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fructose-1,6-bisphosphate aldolase
- EC
- 4.1.2.13
- UniProt
- V5VDS0
- Ligands
- NA
- Pockets
- 2 · best druggability 0.62
Structure
x-ray diffraction · 2 distinct chains · 47% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fructose-1,6-bisphosphate aldolase (EC 4.1.2.13) | protein | 329 | 47% helix, 15% strand | V5VDS0 |
| B | Fructose-1,6-bisphosphate aldolase (EC 4.1.2.13) | protein | 324 | 48% helix, 15% strand | V5VDS0 |
Ligands and binding sites
- NA · Sodium ion · metal · chains A
- CIT · Citric acid · additive · chains A
- FMT · Formic acid · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 376 | 0.62 | 0.78 | 53 | CIT, NA |
| 2 | 185 | 0.54 | 0.79 | 41 | FMT |
Interfaces
1 interface between chains.
- A–B · 1982 Ų buried · 27 hydrogen bonds · protein-protein
Compared structures
- 5U7S · Crystal structure of a fructose-bisphosphate aldolase, class II, Calvin cycle subtype… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt V5VDS0
- Elsewhere: RCSB PDB 5U7S · PDBe 5U7S · UniProt V5VDS0
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