MolNFT v1 · #135633 · protein
Crystal structure of a methyltransferase involved in the biosynthesis of gentamicin
5U4T · Putative gentamicin methyltransferase: “Crystal structure of a methyltransferase involved in the biosynthesis of gentamicin”. X-ray diffraction, 2 ligands (SAH, IOD), 1 pocket (best druggability 0.70). MolNFT v1 #135633 on…
- PDB
- 5U4T
- Type
- protein
- Length
- 316 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative gentamicin methyltransferase
- UniProt
- Q2MG72
- Ligands
- SAH, IOD
- Pockets
- 1 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative gentamicin methyltransferase | protein | 316 | 34% helix, 28% strand | Q2MG72 |
Ligands and binding sites
- SAH · S-adenosyl-L-homocysteine · ligand · chains A
- IOD · Iodide ion · ion · 13 copies · chains A
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 264 | 0.70 | 0.85 | 44 | SAH, TRS |
Compared structures
- 5U4T · Crystal structure of a methyltransferase involved in the biosynthesis of gentamicin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2MG72
- Elsewhere: RCSB PDB 5U4T · PDBe 5U4T · UniProt Q2MG72
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