MolNFT v1 · #135580 · protein
Pseudomonas aeruginosa lpxc in complex with nvs-lpxc-01
5U3B: “Pseudomonas aeruginosa lpxc in complex with nvs-lpxc-01”. X-ray diffraction, 2 ligands (7TD, ZN). MolNFT v1 #135580 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5U3B
- Type
- protein
- Length
- 591 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P47205
- Ligands
- 7TD, ZN
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 297 | — | P47205 |
| B | — | protein | 294 | — | P47205 |
Ligands and binding sites
- 7TD · N-[(2S)-3-amino-1-(hydroxyamino)-3-methyl-1-oxobutan-2-yl]-4-[(but-2-yn-1-yl)oxy]benzamide · ligand · 2 copies · chains A, B
- ZN · Zinc ion · metal · 2 copies · chains A, B
- EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5U3B · Pseudomonas aeruginosa LpxC in complex with NVS-LPXC-01 · the same entry in another collection · chain A against A, TM-score 1.00
- P47205 · AlphaFold monomer V2.0 prediction for udp-3-O-acyl-N- acetylglucosamine deacetylase… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P47205
- Elsewhere: RCSB PDB 5U3B · PDBe 5U3B · UniProt P47205
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