MolNFT v1 · #135463 · protein
Crystal structure of human CD47 ecd bound to Fab of C47B161
5TZT: “Crystal structure of human CD47 ecd bound to Fab of C47B161”. X-ray diffraction, 1 ligand (NAG). MolNFT v1 #135463 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5TZT
- Type
- protein
- Length
- 1,096 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q08722
- Ligands
- NAG
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 218 | — | — |
| A, H | — | protein | 217 | — | — |
| L | — | protein | 219 | — | — |
| C | — | protein | 111 | — | Q08722 |
| D | — | protein | 114 | — | Q08722 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains C, D
- GOL · Glycerol · additive · 5 copies · chains B, A, L, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5TZT · Crystal structure of human CD47 ECD bound to Fab of C47B161 · the same entry in another collection · chain D against D, TM-score 1.00
- Q08722 · AlphaFold monomer V2.0 prediction for leukocyte surface antigen CD47 (Q08722) · a predicted model of the same protein · chain C against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q08722
- Elsewhere: RCSB PDB 5TZT · PDBe 5TZT · UniProt Q08722
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