MolNFT v1 · #135322 · protein
Mouse TDP2 catalytic domain bound to SUMO2
5TVQ: “Mouse TDP2 catalytic domain bound to SUMO2”. X-ray diffraction, 1 ligand (CA). MolNFT v1 #135322 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5TVQ
- Type
- protein
- Length
- 328 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9JJX7, P61957
- Ligands
- CA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 253 | — | Q9JJX7 |
| B | — | protein | 75 | — | P61957 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5TVQ · Mouse Tdp2 catalytic domain bound to SUMO2 · the same entry in another collection · chain A against A, TM-score 1.00
- Q9JJX7 · AlphaFold monomer V2.0 prediction for tyrosyl-DNA phosphodiesterase 2 (Q9JJX7) · a predicted model of the same protein · chain A against A, TM-score 0.99
- P61957 · AlphaFold monomer V2.0 prediction for small ubiquitin-related modifier 2 (P61957) · a predicted model of the same protein · chain B against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9JJX7
- Every structure of UniProt P61957
- Elsewhere: RCSB PDB 5TVQ · PDBe 5TVQ · UniProt Q9JJX7 · UniProt P61957
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