MolNFT v1 · #135300 · protein
Crystal structure of a fragment (1-405) of an elongation factor G from vibrio vulnificus CMCP6
5TV2: “Crystal structure of a fragment (1-405) of an elongation factor G from vibrio vulnificus CMCP6”. X-ray diffraction, 6 pockets (best druggability 0.66). MolNFT v1 #135300 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5TV2
- Type
- protein
- Length
- 365 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Elongation factor G
- UniProt
- Q8DCQ8
- Pockets
- 6 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 28% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Elongation factor G | protein | 365 | 28% helix, 33% strand | Q8DCQ8 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 60 | 0.66 | 0.94 | 18 | empty |
| 2 | 156 | 0.57 | 0.82 | 21 | empty |
| 3 | 58 | 0.50 | 0.85 | 19 | empty |
| 4 | 59 | 0.46 | 0.84 | 13 | empty |
| 5 | 85 | 0.42 | 0.79 | 14 | empty |
Compared structures
- 5TV2 · Crystal structure of a fragment (1-405) of an elongation factor G from Vibrio vulnificus… · the same entry in another collection · chain A against A, TM-score 1.00
- Q8DCQ8 · AlphaFold monomer V2.0 prediction for elongation factor G (Q8DCQ8) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DCQ8
- Elsewhere: RCSB PDB 5TV2 · PDBe 5TV2 · UniProt Q8DCQ8
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