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Crystal structure of a fragment (1-405) of an elongation factor G from vibrio vulnificus CMCP6

Analyse Crystal structure of a fragment (1-405) of an elongation factor G from vibrio… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5TV2
Type: protein
Length: 365 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Elongation factor G
UniProt: Q8DCQ8
Pockets: 6 · best druggability 0.66

Structure

x-ray diffraction · 1 distinct chain · 28% helix, 33% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Elongation factor G	protein	365	28% helix, 33% strand	Q8DCQ8

Pockets

6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	60	0.66	0.94	18	empty
2	156	0.57	0.82	21	empty
3	58	0.50	0.85	19	empty
4	59	0.46	0.84	13	empty
5	85	0.42	0.79	14	empty

Compared structures

5TV2 · Crystal structure of a fragment (1-405) of an elongation factor G from Vibrio vulnificus… · the same entry in another collection · chain A against A, TM-score 1.00
Q8DCQ8 · AlphaFold monomer V2.0 prediction for elongation factor G (Q8DCQ8) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8DCQ8
Elsewhere: RCSB PDB 5TV2 · PDBe 5TV2 · UniProt Q8DCQ8

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