MolNFT v1 · #135181 · protein + DNA
Structure of rbkr (riboflavin kinase) from thermoplasma acidophilum determined in complex with CTP and its cognate DNA operator
5TRD: “Structure of rbkr (riboflavin kinase) from thermoplasma acidophilum determined in complex with CTP and its…”. X-ray diffraction, 2 ligands (CTP, NA). MolNFT v1 #135181 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5TRD
- Type
- protein + DNA
- Length
- 472 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9HJA6
- Ligands
- CTP, NA
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 219 | — | Q9HJA6 |
| B | — | protein | 215 | — | Q9HJA6 |
| G | — | dna | 19 | — | — |
| H | — | dna | 19 | — | — |
Ligands and binding sites
- CTP · Cytidine-5'-triphosphate · ligand · 2 copies · chains A, B
- NA · Sodium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5TRD · Structure of RbkR (Riboflavin Kinase) from Thermoplasma acidophilum determined in complex… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9HJA6 · AlphaFold monomer V2.0 prediction for riboflavin kinase (Q9HJA6) · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HJA6
- Elsewhere: RCSB PDB 5TRD · PDBe 5TRD · UniProt Q9HJA6
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