MolNFT v1 · #135019 · protein
Crystal structure of OS79 from O. sativa in complex with udp.
5TMB · Glycosyltransferase, OS79: “Crystal structure of OS79 from O. sativa in complex with udp.”. X-ray diffraction, 1 ligand (UDP), 3 pockets (best druggability 0.80). MolNFT v1 #135019 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5TMB
- Type
- protein
- Length
- 451 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycosyltransferase, OS79
- EC
- 2.4.1.-
- UniProt
- Q7XT97
- Ligands
- UDP
- Pockets
- 3 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycosyltransferase, OS79 (EC 2.4.1.-) | protein | 451 | 45% helix, 13% strand | Q7XT97 |
Ligands and binding sites
- UDP · Uridine-5'-diphosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 698 | 0.80 | 0.84 | 70 | UDP |
| 2 | 62 | 0.38 | 0.79 | 15 | empty |
| 3 | 90 | 0.36 | 0.75 | 21 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7XT97
- Elsewhere: RCSB PDB 5TMB · PDBe 5TMB · UniProt Q7XT97
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.