MolNFT v1 · #134902 · protein
The structure of the major capsid protein of pbcv-1
5TIQ: “The structure of the major capsid protein of pbcv-1”. X-ray diffraction, 9 ligands (XXR, RM4, 7CV). MolNFT v1 #134902 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5TIQ
- Type
- protein
- Length
- 861 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P30328
- Ligands
- XXR, RM4, 7CV, XYP, BGC, FUC, MAN, GLA, HG
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 436 | — | P30328 |
| B | — | protein | 425 | — | P30328 |
Ligands and binding sites
- XXR · alpha-D-rhamnopyranose · ligand · 6 copies
- RM4 · beta-L-rhamnopyranose · ligand · 5 copies
- 7CV · 6-deoxy-2,3-di-O-methyl-alpha-L-mannopyranose · ligand · 5 copies · chains A, B
- XYP · beta-D-xylopyranose · sugar · 12 copies · chains A, B
- BGC · beta-D-glucopyranose · sugar · 8 copies · chains A, B
- FUC · alpha-L-fucopyranose · sugar · 8 copies · chains A, B
- MAN · alpha-D-mannopyranose · sugar · 6 copies
- GLA · alpha-D-galactopyranose · sugar · 6 copies · chains A, B
- HG · Mercury (II) ion · metal · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5TIQ · The Structure of the Major Capsid protein of PBCV-1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P30328
- Elsewhere: RCSB PDB 5TIQ · PDBe 5TIQ · UniProt P30328
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