MolNFT v1 · #134807 · protein

The archaeal flagellum of methanospirillum hungatei strain JF1.

5TFY · Flagellin: “The archaeal flagellum of methanospirillum hungatei strain JF1.”. Electron microscopy, 20 pockets (best druggability 0.76). MolNFT v1 #134807 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5TFY
Type: protein
Length: 4,264 residues
Chains: 26
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Flagellin
UniProt: Q2FUM4
Pockets: 20 · best druggability 0.76

Structure

electron microscopy · 1 distinct chain · 29% helix, 34% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
I, A, B, C, D, E, F, G, H, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	Flagellin	protein	164	29% helix, 34% strand	Q2FUM4

Pockets

20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	605	0.76	0.82	65	empty
2	288	0.75	0.88	46	empty
3	274	0.74	0.88	46	empty
4	252	0.74	0.88	47	empty
5	276	0.74	0.87	51	empty

Interfaces

149 interfaces between chains.

H–M · 1660 Å² buried · 13 hydrogen bonds · protein-protein
C–Z · 1657 Å² buried · 13 hydrogen bonds · protein-protein
A–X · 1656 Å² buried · 13 hydrogen bonds · protein-protein
P–S · 1656 Å² buried · 13 hydrogen bonds · protein-protein
K–O · 1656 Å² buried · 13 hydrogen bonds · protein-protein

Compared structures

5TFY · The archaeal flagellum of Methanospirillum hungatei strain JF1. · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q2FUM4
Elsewhere: RCSB PDB 5TFY · PDBe 5TFY · UniProt Q2FUM4

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