Research workbench
The archaeal flagellum of methanospirillum hungatei strain JF1.
Analyse The archaeal flagellum of methanospirillum hungatei strain JF1. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5TFY
- Type
- protein
- Length
- 4,264 residues
- Chains
- 26
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Flagellin
- UniProt
- Q2FUM4
- Pockets
- 20 · best druggability 0.76
Structure
electron microscopy · 1 distinct chain · 29% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| I, A, B, C, D, E, F, G, H, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z | Flagellin | protein | 164 | 29% helix, 34% strand | Q2FUM4 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 605 | 0.76 | 0.82 | 65 | empty |
| 2 | 288 | 0.75 | 0.88 | 46 | empty |
| 3 | 274 | 0.74 | 0.88 | 46 | empty |
| 4 | 252 | 0.74 | 0.88 | 47 | empty |
| 5 | 276 | 0.74 | 0.87 | 51 | empty |
Interfaces
149 interfaces between chains.
- H–M · 1660 Ų buried · 13 hydrogen bonds · protein-protein
- C–Z · 1657 Ų buried · 13 hydrogen bonds · protein-protein
- A–X · 1656 Ų buried · 13 hydrogen bonds · protein-protein
- P–S · 1656 Ų buried · 13 hydrogen bonds · protein-protein
- K–O · 1656 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 5TFY · The archaeal flagellum of Methanospirillum hungatei strain JF1. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2FUM4
- Elsewhere: RCSB PDB 5TFY · PDBe 5TFY · UniProt Q2FUM4
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