MolNFT v1 · #134764 · protein
Dimer of HIV-1 gag ctd-SP1 fragment
5TEO: “Dimer of HIV-1 gag ctd-SP1 fragment”. X-ray diffraction, 1 pocket (best druggability 0.30). MolNFT v1 #134764 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5TEO
- Type
- protein
- Length
- 165 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- HIV-1 gag ctd-SP1
- UniProt
- P12497
- Pockets
- 1 · best druggability 0.30
Structure
x-ray diffraction · 2 distinct chains · 67% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | HIV-1 gag ctd-SP1 | protein | 72 | 67% helix, 0% strand | P12497 |
| B | HIV-1 gag ctd-SP1 | protein | 93 | 68% helix, 0% strand | P12497 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 56 | 0.30 | 0.76 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 574 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 5TEO · Dimer of HIV-1 Gag CTD-SP1 fragment · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P12497
- Elsewhere: RCSB PDB 5TEO · PDBe 5TEO · UniProt P12497
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