MolNFT v1 · #134643 · protein

Haloferax volcanii malate synthase LEAD(II) complex

5TAO: “Haloferax volcanii malate synthase LEAD(II) complex”. X-ray diffraction, 5 ligands (GLV, PB, K). MolNFT v1 #134643 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5TAO
Type: protein
Length: 356 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: D4GTL2
Ligands: GLV, PB, K, NA, CL

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	356	—	D4GTL2

Ligands and binding sites

GLV · Glyoxylic acid · ligand · 3 copies · chains A
PB · Lead (II) ion · metal · 4 copies · chains A
K · Potassium ion · metal · 3 copies · chains A
NA · Sodium ion · metal · chains A
CL · Chloride ion · ion · 4 copies · chains A
ACT · Acetate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5TAO · Haloferax volcanii Malate Synthase Lead(II) complex · the same entry in another collection · chain A against A, TM-score 1.00
D4GTL2 · AlphaFold monomer V2.0 prediction for malate synthase (D4GTL2) · a predicted model of the same protein · chain A against A, TM-score 0.77

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D4GTL2
Elsewhere: RCSB PDB 5TAO · PDBe 5TAO · UniProt D4GTL2

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