MolNFT v1 · #134592 · protein
Crystal structure of a S-adenosylmethionine synthase from neisseria gonorrhoeae with bound S-adenosylmethionine, AMP, pyrophosphate, phosphate, and magnesium
5T8S: “Crystal structure of a S-adenosylmethionine synthase from neisseria gonorrhoeae with bound…”. X-ray diffraction, 5 ligands (AMP, POP, 3PO). MolNFT v1 #134592 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5T8S
- Type
- protein
- Length
- 765 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q5FAC0
- Ligands
- AMP, POP, 3PO, MG, PO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 388 | — | Q5FAC0 |
| B | — | protein | 377 | — | Q5FAC0 |
Ligands and binding sites
- AMP · Adenosine monophosphate · ligand · chains A, B
- POP · Pyrophosphate 2- · ligand · chains A, B
- 3PO · Triphosphate · ligand · chains A, B
- MG · Magnesium ion · metal · 4 copies · chains A, B
- PO4 · Phosphate ion · ion · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5T8S · Crystal Structure of a S-adenosylmethionine Synthase from Neisseria gonorrhoeae with… · the same entry in another collection · chain A against A, TM-score 1.00
- Q5FAC0 · AlphaFold monomer V2.0 prediction for S-adenosylmethionine synthase (Q5FAC0) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5FAC0
- Elsewhere: RCSB PDB 5T8S · PDBe 5T8S · UniProt Q5FAC0
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.