MolNFT v1 · #134516 · protein
Structure of the mind complex shows a regulatory focus of yeast kinetochore assembly
5T6J · Kinetochore protein SPC24: “Structure of the mind complex shows a regulatory focus of yeast kinetochore assembly”. X-ray diffraction. MolNFT v1 #134516 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5T6J
- Type
- protein
- Length
- 163 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Kinetochore protein SPC24; Kinetochore protein SPC25; Kinetochore-associated protein DSN1
- UniProt
- Q04477, P40014, P40568
Structure
x-ray diffraction · 3 distinct chains · 48% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Kinetochore protein SPC24 | protein | 59 | 44% helix, 20% strand | Q04477 |
| B | Kinetochore protein SPC25 | protein | 92 | 47% helix, 21% strand | P40014 |
| C | Kinetochore-associated protein DSN1 | protein | 12 | 83% helix, 0% strand | P40568 |
Interfaces
3 interfaces between chains.
- A–B · 1176 Ų buried · 8 hydrogen bonds · protein-protein
- B–C · 461 Ų buried · 1 hydrogen bond · protein-protein
- A–C · 277 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 5T6J · Structure of the MIND Complex Shows a Regulatory Focus of Yeast Kinetochore Assembly · the same entry in another collection · chain A against A, TM-score 1.00
- Q04477 · AlphaFold monomer V2.0 prediction for kinetochore protein SPC24 (Q04477) · a predicted model of the same protein · chain A against A, TM-score 0.94
- P40014 · AlphaFold monomer V2.0 prediction for kinetochore protein SPC25 (P40014) · a predicted model of the same protein · chain B against A, TM-score 0.93
- P40568 · AlphaFold monomer V2.0 prediction for kinetochore-associated protein DSN1 (P40568) · a predicted model of the same protein · chain C against A, TM-score 0.83
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q04477
- Every structure of UniProt P40014
- Every structure of UniProt P40568
- Elsewhere: RCSB PDB 5T6J · PDBe 5T6J · UniProt Q04477 · UniProt P40014 · UniProt P40568
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