MolNFT v1 · #134468 · protein
Structure of the anti-HIV antibody DH501 that binds GP120 V3 glycan and the base of V3 with free MAN9 glycan
5T4Z: “Structure of the anti-HIV antibody DH501 that binds GP120 V3 glycan and the base of V3 with free MAN9 glycan”. X-ray diffraction, 2 ligands (MAN, CA). MolNFT v1 #134468 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5T4Z
- Type
- protein
- Length
- 868 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- MAN, CA
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H | — | protein | 227 | — | — |
| L | — | protein | 213 | — | — |
| A | — | protein | 218 | — | — |
| B | — | protein | 210 | — | — |
Ligands and binding sites
- MAN · alpha-D-mannopyranose · sugar · 3 copies · chains H
- CA · Calcium ion · metal · 2 copies · chains H, L, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5T4Z · Structure of the anti-HIV antibody DH501 that binds GP120 V3 glycan and the base of V3… · the same entry in another collection · chain H against H, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5T4Z · PDBe 5T4Z
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