MolNFT v1 · #134427 · protein

Crystal structure of the pts iia protein associated with the fucose utilization operon from streptococcus pneumoniae

5T3U · Pts system, iia component: “Crystal structure of the pts iia protein associated with the fucose utilization operon from streptococcus…”. X-ray diffraction, 1 pocket (best druggability 0.36). MolNFT v1 #134427 on GenesisL1: 3D…

PDB: 5T3U
Type: protein
Length: 269 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pts system, iia component
UniProt: A0A0H2US38
Pockets: 1 · best druggability 0.36

Structure

x-ray diffraction · 2 distinct chains · 46% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pts system, iia component	protein	136	46% helix, 21% strand	A0A0H2US38
B	Pts system, iia component	protein	133	45% helix, 19% strand	A0A0H2US38

Ligands and binding sites

15P · Polyethylene glycol (N=34) · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	95	0.36	0.74	14	empty

Interfaces

1 interface between chains.

A–B · 644 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

5T3U · Crystal Structure of the PTS IIA protein associated with the fucose utilization operon… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0H2US38
Elsewhere: RCSB PDB 5T3U · PDBe 5T3U · UniProt A0A0H2US38

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