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Crystal structure of the pts iia protein associated with the fucose utilization operon from streptococcus pneumoniae

Analyse Crystal structure of the pts iia protein associated with the fucose utilization… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5T3U
Type: protein
Length: 269 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pts system, iia component
UniProt: A0A0H2US38
Pockets: 1 · best druggability 0.36

Structure

x-ray diffraction · 2 distinct chains · 46% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pts system, iia component	protein	136	46% helix, 21% strand	A0A0H2US38
B	Pts system, iia component	protein	133	45% helix, 19% strand	A0A0H2US38

Ligands and binding sites

15P · Polyethylene glycol (N=34) · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	95	0.36	0.74	14	empty

Interfaces

1 interface between chains.

A–B · 644 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

5T3U · Crystal Structure of the PTS IIA protein associated with the fucose utilization operon… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0H2US38
Elsewhere: RCSB PDB 5T3U · PDBe 5T3U · UniProt A0A0H2US38

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