MolNFT v1 · #13439 · protein
Crystal structure of a recombinant glutathione transferase, created by replacing the last seven residues of each subunit of the human class pi isoenzyme with the additional C-terminal helix of human class alpha isoenzyme
1LBK · Glutathione S-transferase class pi chimaera (coda): “Crystal structure of a recombinant glutathione transferase, created by replacing the last seven residues of…”. X-ray diffraction, 2 ligands (GSH, SO4), 4 pockets (best…
- PDB
- 1LBK
- Type
- protein
- Length
- 416 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glutathione S-transferase class pi chimaera (coda)
- EC
- 2.5.1.18
- UniProt
- P09211, P08263
- Ligands
- GSH, SO4
- Pockets
- 4 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 63% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Glutathione S-transferase class pi chimaera (coda) (EC 2.5.1.18) | protein | 208 | 63% helix, 9% strand | P09211, P08263 |
Ligands and binding sites
- GSH · Glutathione · ligand · 2 copies · chains A, B
- SO4 · Sulfate ion · ion · chains A, B
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 566 | 0.71 | 0.80 | 62 | GSH, SO4 |
| 2 | 80 | 0.37 | 0.76 | 16 | empty |
| 3 | 96 | 0.36 | 0.74 | 18 | empty |
| 4 | 79 | 0.31 | 0.73 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 1321 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
- 1LBK · Crystal structure of a recombinant glutathione transferase, created by replacing the last… · the same entry in another collection · chain A against A, TM-score 1.00
- P08263 · AlphaFold monomer V2.0 prediction for glutathione S-transferase A1 (P08263) · a predicted model of the same protein · chain A against A, TM-score 0.87
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P09211
- Every structure of UniProt P08263
- Elsewhere: RCSB PDB 1LBK · PDBe 1LBK · UniProt P09211 · UniProt P08263
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.