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MolNFT v1 · #13439 · protein

Crystal structure of a recombinant glutathione transferase, created by replacing the last seven residues of each subunit of the human class pi isoenzyme with the additional C-terminal helix of human class alpha isoenzyme

1LBK · Glutathione S-transferase class pi chimaera (coda): “Crystal structure of a recombinant glutathione transferase, created by replacing the last seven residues of…”. X-ray diffraction, 2 ligands (GSH, SO4), 4 pockets (best…

PDB
1LBK
Type
protein
Length
416 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Glutathione S-transferase class pi chimaera (coda)
EC
2.5.1.18
UniProt
P09211, P08263
Ligands
GSH, SO4
Pockets
4 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 63% helix, 9% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
A, BGlutathione S-transferase class pi chimaera (coda) (EC 2.5.1.18)protein20863% helix, 9% strandP09211, P08263

Ligands and binding sites

  • GSH · Glutathione · ligand · 2 copies · chains A, B
  • SO4 · Sulfate ion · ion · chains A, B
  • MES · 2-(N-morpholino)-ethanesulfonic acid · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
15660.710.8062GSH, SO4
2800.370.7616empty
3960.360.7418empty
4790.310.7317empty

Interfaces

1 interface between chains.

  • A–B · 1321 Ų buried · 17 hydrogen bonds · protein-protein

Compared structures

  • 1LBK · Crystal structure of a recombinant glutathione transferase, created by replacing the last… · the same entry in another collection · chain A against A, TM-score 1.00
  • P08263 · AlphaFold monomer V2.0 prediction for glutathione S-transferase A1 (P08263) · a predicted model of the same protein · chain A against A, TM-score 0.87

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