MolNFT v1 · #134292 · protein
Protocadherin gamma B7 extracellular cadherin domains 1-4 P21 crystal form
5SZP: “Protocadherin gamma B7 extracellular cadherin domains 1-4 P21 crystal form”. X-ray diffraction, 4 ligands (TMO, MAN, NAG). MolNFT v1 #134292 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5SZP
- Type
- protein
- Length
- 818 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q91XX3
- Ligands
- TMO, MAN, NAG, CA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 409 | — | Q91XX3 |
Ligands and binding sites
- TMO · trimethylamine oxide · ligand · chains A, B
- MAN · alpha-D-mannopyranose · sugar · 7 copies · chains A, B
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
- CA · Calcium ion · metal · 18 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5SZP · Protocadherin Gamma B7 extracellular cadherin domains 1-4 P21 crystal form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q91XX3
- Elsewhere: RCSB PDB 5SZP · PDBe 5SZP · UniProt Q91XX3
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