MolNFT v1 · #134171 · protein
Structure of the human hemoglobin mutant hb providence (a-gly-C:V1M; B,D:V1M,K82D; ferrous, carbonmonoxy bound)
5SW7 · Hemoglobin subunit alpha: “Structure of the human hemoglobin mutant hb providence (a-gly-C:V1M; B,D:V1M,K82D; ferrous, carbonmonoxy…”. X-ray diffraction, 3 ligands (HEM, CMO, PO4), 5 pockets (best druggability 0.73). MolNFT v1…
- PDB
- 5SW7
- Type
- protein
- Length
- 288 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hemoglobin subunit alpha; Hemoglobin subunit beta
- UniProt
- P69905, P68871
- Ligands
- HEM, CMO, PO4
- Pockets
- 5 · best druggability 0.73
Structure
x-ray diffraction · 2 distinct chains · 77% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hemoglobin subunit alpha | protein | 142 | 80% helix, 0% strand | P69905 |
| B | Hemoglobin subunit beta | protein | 146 | 75% helix, 0% strand | P68871 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · 2 copies · chains A, B
- CMO · Carbon monoxide · ion · 2 copies · chains A, B
- PO4 · Phosphate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 208 | 0.73 | 0.88 | 25 | HEM, CMO |
| 2 | 183 | 0.66 | 0.85 | 24 | HEM, CMO |
| 3 | 119 | 0.51 | 0.81 | 21 | empty |
| 4 | 51 | 0.35 | 0.79 | 12 | PO4 |
| 5 | 56 | 0.31 | 0.76 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 966 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 5SW7 · Structure of the Human Hemoglobin Mutant Hb Providence (A-Gly-C:V1M; B,D:V1M,K82D… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P69905
- Every structure of UniProt P68871
- Elsewhere: RCSB PDB 5SW7 · PDBe 5SW7 · UniProt P69905 · UniProt P68871
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