MolNFT v1 · #134116 · protein
Crystal structure of N-glycan transport solute binding protein (ngts) from streptococcus pneumoniae
5SUO · Extracellular solute-binding protein: “Crystal structure of N-glycan transport solute binding protein (ngts) from streptococcus pneumoniae”. X-ray diffraction, 1 ligand (IOD), 3 pockets (best druggability 0.68). MolNFT v1 #134116 on…
- PDB
- 5SUO
- Type
- protein
- Length
- 451 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Extracellular solute-binding protein
- UniProt
- A0A0T7JX40
- Ligands
- IOD
- Pockets
- 3 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Extracellular solute-binding protein | protein | 451 | 43% helix, 17% strand | A0A0T7JX40 |
Ligands and binding sites
- IOD · Iodide ion · ion · 21 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 445 | 0.68 | 0.80 | 58 | IOD |
| 2 | 632 | 0.68 | 0.77 | 69 | IOD |
| 3 | 101 | 0.39 | 0.76 | 15 | IOD |
Compared structures
- 5SUO · Crystal structure of N-glycan transport solute binding protein (NgtS) from Streptococcus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0T7JX40
- Elsewhere: RCSB PDB 5SUO · PDBe 5SUO · UniProt A0A0T7JX40
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