MolNFT v1 · #134109 · protein

The structure of double ringed trimeric shell protein MSM0271 from the rmm microcompartment

5SUH · MSM0271 protein: “The structure of double ringed trimeric shell protein MSM0271 from the rmm microcompartment”. X-ray diffraction, 2 pockets (best druggability 0.63). MolNFT v1 #134109 on GenesisL1: 3D structure, binding sites and…

PDB: 5SUH
Type: protein
Length: 609 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: MSM0271 protein
UniProt: A0QP48
Pockets: 2 · best druggability 0.63

Structure

x-ray diffraction · 3 distinct chains · 37% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	MSM0271 protein	protein	204	37% helix, 30% strand	A0QP48
B	MSM0271 protein	protein	202	35% helix, 31% strand	A0QP48
C	MSM0271 protein	protein	203	37% helix, 30% strand	A0QP48

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	309	0.63	0.79	32	empty
2	462	0.60	0.75	54	empty

Interfaces

3 interfaces between chains.

A–C · 1126 Å² buried · 19 hydrogen bonds · protein-protein
B–C · 1111 Å² buried · 15 hydrogen bonds · protein-protein
A–B · 1096 Å² buried · 18 hydrogen bonds · protein-protein

Compared structures

5SUH · The structure of double ringed trimeric shell protein MSM0271 from the RMM… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0QP48
Elsewhere: RCSB PDB 5SUH · PDBe 5SUH · UniProt A0QP48

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