MolNFT v1 · #133793 · protein
DDR1, N-[2-[3-(2-aminopyrimidin-5-YL)OXYPHENYL]ETHYL]-3- (TRIFLUOROMETHOXY)BENZAMIDE, 2.190A, P1211, RFREE=27.7%
5SAY: “DDR1, N-[2-[3-(2-aminopyrimidin-5-YL)OXYPHENYL]ETHYL]-3- (TRIFLUOROMETHOXY)BENZAMIDE, 2.190A, P1211…”. X-ray diffraction, 2 ligands (1IJ, IOD). MolNFT v1 #133793 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5SAY
- Type
- protein
- Length
- 578 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q08345
- Ligands
- 1IJ, IOD
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 290 | — | Q08345 |
| B | — | protein | 288 | — | Q08345 |
Ligands and binding sites
- 1IJ · N-(2-{3-[(2-aminopyrimidin-5-yl)oxy]phenyl}ethyl)-3-(trifluoromethoxy)benzamide · ligand · 2 copies · chains A, B
- IOD · Iodide ion · ion · 15 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5SAY · DDR1, N-[2-[3-(2-aminopyrimidin-5-yl)oxyphenyl]ethyl]-3-(trifluoromethoxy)benzamide… · the same entry in another collection · chain A against A, TM-score 1.00
- Q08345 · AlphaFold monomer V2.0 prediction for epithelial discoidin domain- containing receptor 1… · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q08345
- Elsewhere: RCSB PDB 5SAY · PDBe 5SAY · UniProt Q08345
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