MolNFT v1 · #13328 · protein

A cavity-containing mutant of T4 lysozyme is stabilized by buried benzene

1L83: “A cavity-containing mutant of T4 lysozyme is stabilized by buried benzene”. X-ray diffraction, 2 ligands (BNZ, CL), 1 pocket (best druggability 0.52). MolNFT v1 #13328 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1L83
Type: protein
Length: 162 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: T4 lysozyme
EC: 3.2.1.17
UniProt: P00720
Ligands: BNZ, CL
Pockets: 1 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 65% helix, 9% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	T4 lysozyme (EC 3.2.1.17)	protein	162	65% helix, 9% strand	P00720

Ligands and binding sites

BNZ · Benzene · ligand · chains A
CL · Chloride ion · ion · 2 copies · chains A
BME · Beta-mercaptoethanol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	248	0.52	0.75	30	empty

Compared structures

1L83 · A cavity-containing mutant of T4 lysozyme is stabilized by buried benzene · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00720
Elsewhere: RCSB PDB 1L83 · PDBe 1L83 · UniProt P00720

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