MolNFT v1 · #13312 · protein
X-ray structure of galactose mutarotase from lactococcus lactis complexed with galactose
1L7K: “X-ray structure of galactose mutarotase from lactococcus lactis complexed with galactose”. X-ray diffraction, 2 ligands (GLA, NA), 6 pockets (best druggability 0.71). MolNFT v1 #13312 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1L7K
- Type
- protein
- Length
- 685 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Galactose mutarotase
- EC
- 5.1.3.3
- UniProt
- Q9ZB17
- Ligands
- GLA, NA
- Pockets
- 6 · best druggability 0.71
Structure
x-ray diffraction · 2 distinct chains · 9% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Galactose mutarotase (EC 5.1.3.3) | protein | 339 | 9% helix, 44% strand | Q9ZB17 |
| B | Galactose mutarotase (EC 5.1.3.3) | protein | 346 | 9% helix, 43% strand | Q9ZB17 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 440 | 0.71 | 0.81 | 66 | empty |
| 2 | 172 | 0.60 | 0.83 | 38 | GLA |
| 3 | 171 | 0.60 | 0.83 | 34 | GLA |
| 4 | 69 | 0.34 | 0.76 | 17 | empty |
| 5 | 121 | 0.34 | 0.72 | 28 | empty |
Interfaces
1 interface between chains.
- A–B · 1018 Ų buried · 18 hydrogen bonds · protein-protein
Compared structures
- 1L7K · x-ray structure of galactose mutarotase from Lactococcus lactis complexed with galactose · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9ZB17
- Elsewhere: RCSB PDB 1L7K · PDBe 1L7K · UniProt Q9ZB17
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