MolNFT v1 · #13284 · protein
Crystal structure of thermoplasma acidophilum 0175 (APC0014)
1L6R · Hypothetical protein TA0175: “Crystal structure of thermoplasma acidophilum 0175 (APC0014)”. X-ray diffraction, 1 ligand (CA), 5 pockets (best druggability 0.71). MolNFT v1 #13284 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1L6R
- Type
- protein
- Length
- 450 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein TA0175
- UniProt
- Q9HLQ2
- Ligands
- CA
- Pockets
- 5 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Hypothetical protein TA0175 | protein | 225 | 42% helix, 21% strand | Q9HLQ2 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 600 | 0.71 | 0.79 | 62 | empty |
| 2 | 77 | 0.46 | 0.82 | 28 | CA |
| 3 | 140 | 0.43 | 0.76 | 30 | CA |
| 4 | 85 | 0.32 | 0.73 | 18 | empty |
| 5 | 71 | 0.29 | 0.73 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 790 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 1L6R · Crystal Structure of Thermoplasma acidophilum 0175 (APC0014) · the same entry in another collection · chain A against A, TM-score 1.00
- Q9HLQ2 · AlphaFold monomer V2.0 prediction for phosphoglycolate phosphatase (Q9HLQ2) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HLQ2
- Elsewhere: RCSB PDB 1L6R · PDBe 1L6R · UniProt Q9HLQ2
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