MolNFT v1 · #132717 · protein
Pandda analysis group deposition FORM1 MAP kinase P38-alpha -- fragment N05703B in complex with MAP kinase P38-alpha
5R8U · Mitogen-activated protein kinase 14: “Pandda analysis group deposition FORM1 MAP kinase P38-alpha -- fragment N05703B in complex with MAP kinase…”. X-ray diffraction, 4 ligands (SLS, MG, CL), 7 pockets (best druggability 0.72).…
- PDB
- 5R8U
- Type
- protein
- Length
- 346 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mitogen-activated protein kinase 14
- EC
- 2.7.11.24
- UniProt
- P47811
- Ligands
- SLS, MG, CL, SO4
- Pockets
- 7 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mitogen-activated protein kinase 14 (EC 2.7.11.24) | protein | 346 | 40% helix, 14% strand | P47811 |
Ligands and binding sites
- SLS · 3,4-dihydro-2~{H}-chromene-6-carboxamide · ligand · chains A
- MG · Magnesium ion · metal · chains A
- CL · Chloride ion · ion · 4 copies · chains A
- SO4 · Sulfate ion · ion · 3 copies · chains A
- DMS · Dimethyl sulfoxide · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 380 | 0.72 | 0.83 | 47 | SLS, DMS |
| 2 | 271 | 0.57 | 0.77 | 32 | CL, SO4 |
| 3 | 105 | 0.40 | 0.76 | 22 | CL, DMS |
| 4 | 83 | 0.33 | 0.74 | 17 | empty |
| 5 | 67 | 0.31 | 0.75 | 19 | empty |
Compared structures
- 5R8U · PanDDA analysis group deposition Form1 MAP kinase p38-alpha -- Fragment N05703b in… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P47811
- Elsewhere: RCSB PDB 5R8U · PDBe 5R8U · UniProt P47811
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