MolNFT v1 · #132711 · protein
Pandda analysis group deposition interleukin-1 beta -- fragment Z1818332938 in complex with interleukin-1 beta
5R8M: “Pandda analysis group deposition interleukin-1 beta -- fragment Z1818332938 in complex with interleukin-1 beta”. X-ray diffraction, 2 ligands (S8G, SO4). MolNFT v1 #132711 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5R8M
- Type
- protein
- Length
- 152 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Interleukin-1 beta
- UniProt
- P01584
- Ligands
- S8G, SO4
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 52% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Interleukin-1 beta | protein | 152 | 6% helix, 52% strand | P01584 |
Ligands and binding sites
- S8G · 1-[(3~{R})-3-azanylpiperidin-1-yl]-4,4,4-tris(fluoranyl)butan-1-one · ligand · chains A
- SO4 · Sulfate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5R8M · PanDDA analysis group deposition INTERLEUKIN-1 BETA -- Fragment Z1818332938 in complex… · the same entry in another collection · chain A against A, TM-score 1.00
- P01584 · AlphaFold monomer V2.0 prediction for interleukin-1 beta (P01584) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P01584
- Elsewhere: RCSB PDB 5R8M · PDBe 5R8M · UniProt P01584
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