MolNFT v1 · #132686 · protein
Pandda analysis group deposition of ground-state model of human JMJD1B
5R7X: “Pandda analysis group deposition of ground-state model of human JMJD1B”. X-ray diffraction, 2 ligands (MN, CL). MolNFT v1 #132686 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5R7X
- Type
- protein
- Length
- 684 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q7LBC6
- Ligands
- MN, CL
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 340 | — | Q7LBC6 |
| B | — | protein | 344 | — | Q7LBC6 |
Ligands and binding sites
- MN · Manganese (II) ion · metal · 2 copies · chains A, B
- CL · Chloride ion · ion · 5 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5R7X · PanDDA analysis group deposition of ground-state model of Human JMJD1B · the same entry in another collection · chain A against A, TM-score 1.00
- Q7LBC6 · AlphaFold monomer V2.0 prediction for lysine-specific demethylase 3B (Q7LBC6) · a predicted model of the same protein · chain B against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7LBC6
- Elsewhere: RCSB PDB 5R7X · PDBe 5R7X · UniProt Q7LBC6
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