MolNFT v1 · #132623 · protein

Pandda analysis group deposition -- crystal structure of the bromodomain of human nucleosome-remodeling factor subunit bptf in complex with FMOPL000292A

5R4K: “Pandda analysis group deposition -- crystal structure of the bromodomain of human nucleosome-remodeling…”. X-ray diffraction, 1 ligand (K0V), 1 pocket (best druggability 0.52). MolNFT v1 #132623 on GenesisL1: 3D structure, binding…

PDB: 5R4K
Type: protein
Length: 119 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nucleosome-remodeling factor subunit bptf
UniProt: Q12830
Ligands: K0V
Pockets: 1 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 69% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nucleosome-remodeling factor subunit bptf	protein	119	69% helix, 2% strand	Q12830

Ligands and binding sites

K0V · methyl 1-(tert-butylcarbamoyl)piperidine-4-carboxylate · ligand · chains A
DMS · Dimethyl sulfoxide · additive · chains A
TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	102	0.52	0.82	20	K0V

Compared structures

5R4K · PanDDA analysis group deposition -- CRYSTAL STRUCTURE OF THE BROMODOMAIN OF HUMAN… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q12830
Elsewhere: RCSB PDB 5R4K · PDBe 5R4K · UniProt Q12830

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