MolNFT v1 · #132372 · protein
Pandda analysis group deposition -- crystal structure of ATAD2 in complex with DF776
5QXL: “Pandda analysis group deposition -- crystal structure of ATAD2 in complex with DF776”. X-ray diffraction, 2 ligands (RGD, SO4). MolNFT v1 #132372 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5QXL
- Type
- protein
- Length
- 130 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q6PL18
- Ligands
- RGD, SO4
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 130 | — | Q6PL18 |
Ligands and binding sites
- RGD · cyclobutyl[(2S,3aS,6aS)-6a-(2-hydroxyethyl)-2-(hydroxymethyl)hexahydro-5H-furo[2,3-c]pyrrol-5-yl]methanone · ligand · chains A
- SO4 · Sulfate ion · ion · 2 copies · chains A
- EDO · 1,2-ethanediol · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5QXL · PanDDA analysis group deposition -- Crystal Structure of ATAD2 in complex with DF776 · the same entry in another collection · chain A against A, TM-score 1.00
- Q6PL18 · AlphaFold monomer V2.0 prediction for ATPase family aaa domain- containing protein 2… · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6PL18
- Elsewhere: RCSB PDB 5QXL · PDBe 5QXL · UniProt Q6PL18
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