MolNFT v1 · #132153 · protein
Pandda analysis group deposition -- crystal structure of DCP2 (NUDT20) in complex with Z1699011516
5QOV: “Pandda analysis group deposition -- crystal structure of DCP2 (NUDT20) in complex with Z1699011516”. X-ray diffraction, 1 ligand (LE4). MolNFT v1 #132153 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5QOV
- Type
- protein
- Length
- 149 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8IU60
- Ligands
- LE4
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 149 | — | Q8IU60 |
Ligands and binding sites
- LE4 · [2-(cycloheptylamino)pyrimidin-4-yl]methanol · ligand · chains A
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
- ACT · Acetate ion · additive · 2 copies · chains A
- DMS · Dimethyl sulfoxide · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5QOV · PanDDA analysis group deposition -- Crystal Structure of DCP2 (NUDT20) in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
- Q8IU60 · AlphaFold monomer V2.0 prediction for M7GPPPN-mRNA hydrolase (Q8IU60) · a predicted model of the same protein · chain A against A, TM-score 0.90
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8IU60
- Elsewhere: RCSB PDB 5QOV · PDBe 5QOV · UniProt Q8IU60
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