MolNFT v1 · #1320 · protein
Nodularin from nodularia spumigena
1AY3 · Peptidic toxin nodularin: “Nodularin from nodularia spumigena”. Solution nmr, 4 ligands (ACB, MFD, FGA). MolNFT v1 #1320 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1AY3
- Type
- protein
- Length
- 1 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peptidic toxin nodularin
- Ligands
- ACB, MFD, FGA, MDH
Structure
solution nmr · 1 distinct chain · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptidic toxin nodularin | protein | 1 | 0% helix, 0% strand | — |
Ligands and binding sites
- ACB · 3-methyl-beta-D-aspartic acid · ligand · chains A
- MFD · (2S,3S,8S,9S)-3-amino-9-methoxy-2,6,8-trimethyl-10-phenyldeca-4,6-dienoic acid · ligand · chains A
- FGA · Gamma-D-glutamic acid · ligand · chains A
- MDH · N-methyldehydrobutyrine · ligand
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 2 covalent (covalent ligand).
Compared structures
- 1AY3 · Nodularin from Nodularia spumigena · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1AY3 · PDBe 1AY3
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