MolNFT v1 · #131939 · protein
Covalent fragment group deposition -- crystal structure of OUTB2 in complex with pcm-0103007
5QIX · Ubiquitin thioesterase OTUB2: “Covalent fragment group deposition -- crystal structure of OUTB2 in complex with pcm-0103007”. X-ray diffraction, 2 ligands (J5V, UNL). MolNFT v1 #131939 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5QIX
- Type
- protein
- Length
- 223 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ubiquitin thioesterase OTUB2
- EC
- 3.4.19.12
- UniProt
- Q96DC9
- Ligands
- J5V, UNL
Structure
x-ray diffraction · 1 distinct chain · 56% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ubiquitin thioesterase OTUB2 (EC 3.4.19.12) | protein | 223 | 56% helix, 13% strand | Q96DC9 |
Ligands and binding sites
- J5V · N-(3-phenylprop-2-yn-1-yl)acetamide · ligand · chains A
- UNL · Unknown ligand · ion · 3 copies · chains A
- EDO · 1,2-ethanediol · additive · 7 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 5QIX · Covalent fragment group deposition -- Crystal Structure of OUTB2 in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
- Q96DC9 · AlphaFold monomer V2.0 prediction for ubiquitin thioesterase OTUB2 (Q96DC9) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q96DC9
- Elsewhere: RCSB PDB 5QIX · PDBe 5QIX · UniProt Q96DC9
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.