Covalent fragment group deposition -- crystal structure of OUTB2 in complex with pcm-0102821

Structure

x-ray diffraction · 1 distinct chain · 56% helix, 13% strand (DSSP).

Ligands and binding sites

• J5J · N-[(E)-(3-methylphenyl)methylidene]acetamide · ligand · chains A
• EDO · 1,2-ethanediol · additive · 3 copies · chains A
• PEG · Di(hydroxyethyl)ether · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 1 covalent (covalent ligand).

Compared structures

• 5QIT · Covalent fragment group deposition -- Crystal Structure of OUTB2 in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
• Q96DC9 · AlphaFold monomer V2.0 prediction for ubiquitin thioesterase OTUB2 (Q96DC9) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt Q96DC9
• Elsewhere: RCSB PDB 5QIT · PDBe 5QIT · UniProt Q96DC9