MolNFT v1 · #131934 · protein
Covalent fragment group deposition -- crystal structure of OUTB2 in complex with pcm-0102500
5QIS · Ubiquitin thioesterase OTUB2: “Covalent fragment group deposition -- crystal structure of OUTB2 in complex with pcm-0102500”. X-ray diffraction, 1 ligand (J5G). MolNFT v1 #131934 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 5QIS
- Type
- protein
- Length
- 225 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ubiquitin thioesterase OTUB2
- EC
- 3.4.19.12
- UniProt
- Q96DC9
- Ligands
- J5G
Structure
x-ray diffraction · 1 distinct chain · 56% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ubiquitin thioesterase OTUB2 (EC 3.4.19.12) | protein | 225 | 56% helix, 13% strand | Q96DC9 |
Ligands and binding sites
- J5G · N-(5-methyl-1,2-oxazol-3-yl)acetamide · ligand · chains A
- EDO · 1,2-ethanediol · additive · 3 copies · chains A
- PEG · Di(hydroxyethyl)ether · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 5QIS · Covalent fragment group deposition -- Crystal Structure of OUTB2 in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
- Q96DC9 · AlphaFold monomer V2.0 prediction for ubiquitin thioesterase OTUB2 (Q96DC9) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q96DC9
- Elsewhere: RCSB PDB 5QIS · PDBe 5QIS · UniProt Q96DC9
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