MolNFT v1 · #131920 · protein
Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal structure of HAO1 in complex with Z2856434894
5QIE · Hydroxyacid oxidase 1: “Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal structure of…”. X-ray diffraction, 2 ligands (FMN, GWV), 4 pockets (best druggability 0.80). MolNFT v1 #131920…
- PDB
- 5QIE
- Type
- protein
- Length
- 353 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hydroxyacid oxidase 1
- EC
- 1.1.3.15
- UniProt
- Q9UJM8
- Ligands
- FMN, GWV
- Pockets
- 4 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hydroxyacid oxidase 1 (EC 1.1.3.15) | protein | 353 | 46% helix, 14% strand | Q9UJM8 |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · chains A
- GWV · ~{N},~{N}-dimethyl-4-[(propan-2-ylamino)methyl]aniline · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 150 | 0.80 | 0.97 | 30 | FMN |
| 2 | 134 | 0.46 | 0.77 | 25 | empty |
| 3 | 53 | 0.31 | 0.77 | 17 | empty |
| 4 | 52 | 0.25 | 0.72 | 14 | empty |
Compared structures
- 5QIE · PanDDA analysis group deposition of models with modelled events (e.g. bound ligands)… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9UJM8 · AlphaFold monomer V2.0 prediction for hydroxyacid oxidase 1 (Q9UJM8) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UJM8
- Elsewhere: RCSB PDB 5QIE · PDBe 5QIE · UniProt Q9UJM8
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